CSFA (version 1.2.0)

CSanalysis,matrix,matrix,character-method: Connectivity Score Analysis.

Description

Doing a CS analysis, interactively generating graphs. See specific type for additional parameteres. Types:

• Zhang and Gant

• MFA

• PCA

• Sparse MFA

• FABIA

Usage

# S4 method for matrix,matrix,character
CSanalysis(querMat, refMat, type, ...)

Arguments

querMat

Query matrix (Rows = genes and columns = compounds)

refMat

Reference matrix

type

Type of Factor Analysis or Zhang & Gant ( "CSfabia", "CSmfa", "CSpca", "CSsmfa" or "CSzhang")

...

Additional parameters for analysis

Value

An object of the S4 Class CSresult-class.

Examples

# NOT RUN {
data("dataSIM",package="CSFA")
Mat1 <- dataSIM[,c(1:6)]
Mat2 <- dataSIM[,-c(1:6)]

MFA_analysis <- CSanalysis(Mat1,Mat2,"CSmfa")
FABIA_analysis <- CSanalysis(Mat1,Mat2,"CSfabia")
ZHANG_analysis <- CSanalysis(Mat1,Mat2,"CSzhang")
# }