CTRing (version 0.1.0)

checkProfile: Verify position of ring transitions of a density profile

Description

Verify position of ring transitions of a density profile

Usage

checkProfile(profile_with_borders, totRings)

Value

xRing profile with corrected ring location

Arguments

profile_with_borders

xRing profile with transitions between rings located

totRings

Total number of rings of the disk

Examples

library(oro.dicom)
file_path <- system.file("extdata", "disk.dcm", package = "CTRing")
dcm <-  readDICOM(file_path)
hdr_df <- dcm$hdr[[1]]
image_info <- getImageInfo(hdr = hdr_df)

im <- imageToMatrix(dcm$img)
im_8bit <- xBitTo8Bit(im, image_info$grayScale)
image_info <- getImageInfo(hdr = hdr_df)
im_dens <- grayToDensity(im_8bit)

pith_coord <- detect_pith(im_dens,
                          n_segments = 12,
                          pixel = TRUE,
                          toPlot = FALSE)

endPath <- c(472, 284)

densPath <- extractProfile(im_dens,
                           image_info,
                           pith_coord,
                           endPath,
                           k = 2, r = 5,
                           threshold = 0.002)

newPath <- checkProfile(densPath, 26)