PairsFiltering

Non-linear/linear hybrid method for batch-effect correction
that uses Mutual Nearest Neighbors (MNNs) to identify similar cells between
datasets. Reference: Loza M. et al. (NAR Genomics and Bioinformatics, 2020) <doi:10.1093/nargab/lqac022>.

Martin Loza

Canek

Batch Correction of Single Cell Transcriptome Data

Diego Diez

PairsFiltering function

<dl><dt>refBatch</dt>
<dd>Reference batch single-cell data.</dd>
<dt>queBatch</dt>
<dd>Query's batch single-cell data.</dd>
<dt>pairs</dt>
<dd>A matrix containing MNNs pairs. First column corresponds to query-batch cell indexes.</dd>
<dt>verbose</dt>
<dd>Print output.</dd></dl>

Arguments

Title PairsFiltering — PairsFiltering

<dl>

<dt>refBatch</dt>
<dd>Reference batch single-cell data.</dd>


<dt>queBatch</dt>
<dd>Query's batch single-cell data.</dd>


<dt>pairs</dt>
<dd>A matrix containing MNNs pairs. First column corresponds to query-batch cell indexes.</dd>


<dt>verbose</dt>
<dd>Print output.</dd>

</dl>

PairsFiltering: Title PairsFiltering

Description

Usage

Value

Arguments

Details