SimBatches

Dataset with simulated single cell RNA-seq from 2 batches.

datasets

Non-linear/linear hybrid method for batch-effect correction
that uses Mutual Nearest Neighbors (MNNs) to identify similar cells between
datasets. Reference: Loza M. et al. (NAR Genomics and Bioinformatics, 2020) <doi:10.1093/nargab/lqac022>.

Martin Loza

Canek

Batch Correction of Single Cell Transcriptome Data

Diego Diez

SimBatches function

A list with the following elements:<dl>
 <dt>batches</dt>
<dd>a list with two matrices representing the two batches</dd> <dt>pairs</dt>
<dd>matrix of pairs between the two batches.</dd> <dt>cell_types</dt>
<dd>a factor with the cell clusters.</dd> ...</dl>

Format

Dataset with simulated single cell RNA-seq from 2 batches. — SimBatches

A list with the following elements:<dl>
 <dt>batches</dt>
<dd>a list with two matrices representing the two batches</dd>

 <dt>pairs</dt>
<dd>matrix of pairs between the two batches.</dd>

 <dt>cell_types</dt>
<dd>a factor with the cell clusters.</dd>

 ...

</dl>

SimBatches: Dataset with simulated single cell RNA-seq from 2 batches.

Description

Usage

Arguments

Format