.build_dependency_graph

Internal function to build a dependency graph for packages

internal

A comprehensive reproducibility framework designed for R and bioinformatics
workflows. Automatically captures the entire analysis environment including R session
info, package versions, external tool versions ('Samtools', 'STAR', 'BWA', etc.), 'conda'
environments, reference genomes, data provenance with smart checksumming for large files,
parameter choices, random seeds, and hardware specifications. Generates executable scripts
with 'Docker', 'Singularity', and 'renv' configurations. Integrates with workflow managers
('Nextflow', 'Snakemake', 'WDL', 'CWL') to ensure complete reproducibility of computational
research workflows.

Abu SAADAT

Capsule

Comprehensive Reproducibility Framework for R and Bioinformatics
Analysis

.build_dependency_graph function

<dl><dt>packages</dt>
<dd>Character vector of package names</dd></dl>

Arguments

Build Dependency Graph — .build_dependency_graph

<dl>

<dt>packages</dt>
<dd>Character vector of package names</dd>

</dl>

.build_dependency_graph: Build Dependency Graph

Description

Usage

Value

Arguments