.extract_package_info

Internal function to extract detailed package information

internal

A comprehensive reproducibility framework designed for R and bioinformatics
workflows. Automatically captures the entire analysis environment including R session
info, package versions, external tool versions ('Samtools', 'STAR', 'BWA', etc.), 'conda'
environments, reference genomes, data provenance with smart checksumming for large files,
parameter choices, random seeds, and hardware specifications. Generates executable scripts
with 'Docker', 'Singularity', and 'renv' configurations. Integrates with workflow managers
('Nextflow', 'Snakemake', 'WDL', 'CWL') to ensure complete reproducibility of computational
research workflows.

Abu SAADAT

Capsule

Comprehensive Reproducibility Framework for R and Bioinformatics
Analysis

.extract_package_info function

<dl><dt>pkg_list</dt>
<dd>List of package info from sessionInfo()</dd></dl>

Arguments

Extract Package Information — .extract_package_info

<dl>

<dt>pkg_list</dt>
<dd>List of package info from sessionInfo()</dd>

</dl>

.extract_package_info: Extract Package Information

Description

Usage

Value

Arguments