.get_fasta_stats

Internal function to extract basic statistics from a FASTA file

internal

A comprehensive reproducibility framework designed for R and bioinformatics
workflows. Automatically captures the entire analysis environment including R session
info, package versions, external tool versions ('Samtools', 'STAR', 'BWA', etc.), 'conda'
environments, reference genomes, data provenance with smart checksumming for large files,
parameter choices, random seeds, and hardware specifications. Generates executable scripts
with 'Docker', 'Singularity', and 'renv' configurations. Integrates with workflow managers
('Nextflow', 'Snakemake', 'WDL', 'CWL') to ensure complete reproducibility of computational
research workflows.

Abu SAADAT

Capsule

Comprehensive Reproducibility Framework for R and Bioinformatics
Analysis

.get_fasta_stats function

<dl><dt>fasta_path</dt>
<dd>Character. Path to FASTA file</dd></dl>

Arguments

Get FASTA Statistics — .get_fasta_stats

<dl>

<dt>fasta_path</dt>
<dd>Character. Path to FASTA file</dd>

</dl>

.get_fasta_stats: Get FASTA Statistics

Description

Usage

Value

Arguments