.get_tool_path

Internal function to get the full path to a command-line tool

internal

A comprehensive reproducibility framework designed for R and bioinformatics
workflows. Automatically captures the entire analysis environment including R session
info, package versions, external tool versions ('Samtools', 'STAR', 'BWA', etc.), 'conda'
environments, reference genomes, data provenance with smart checksumming for large files,
parameter choices, random seeds, and hardware specifications. Generates executable scripts
with 'Docker', 'Singularity', and 'renv' configurations. Integrates with workflow managers
('Nextflow', 'Snakemake', 'WDL', 'CWL') to ensure complete reproducibility of computational
research workflows.

Abu SAADAT

Capsule

Comprehensive Reproducibility Framework for R and Bioinformatics
Analysis

.get_tool_path function

<dl><dt>tool</dt>
<dd>Character. Tool name</dd></dl>

Arguments

Get Tool Path — .get_tool_path

<dl>

<dt>tool</dt>
<dd>Character. Tool name</dd>

</dl>

.get_tool_path: Get Tool Path

Description

Usage

Value

Arguments