.parse_deps

Internal function to parse package dependency strings

internal

A comprehensive reproducibility framework designed for R and bioinformatics
workflows. Automatically captures the entire analysis environment including R session
info, package versions, external tool versions ('Samtools', 'STAR', 'BWA', etc.), 'conda'
environments, reference genomes, data provenance with smart checksumming for large files,
parameter choices, random seeds, and hardware specifications. Generates executable scripts
with 'Docker', 'Singularity', and 'renv' configurations. Integrates with workflow managers
('Nextflow', 'Snakemake', 'WDL', 'CWL') to ensure complete reproducibility of computational
research workflows.

Abu SAADAT

Capsule

Comprehensive Reproducibility Framework for R and Bioinformatics
Analysis

.parse_deps function

<dl><dt>dep_string</dt>
<dd>Character. Dependency string from package description</dd></dl>

Arguments

Parse Package Dependencies — .parse_deps

<dl>

<dt>dep_string</dt>
<dd>Character. Dependency string from package description</dd>

</dl>

.parse_deps: Parse Package Dependencies

Description

Usage

Value

Arguments