.save_reference_registry

Internal function to save the reference registry

internal

A comprehensive reproducibility framework designed for R and bioinformatics
workflows. Automatically captures the entire analysis environment including R session
info, package versions, external tool versions ('Samtools', 'STAR', 'BWA', etc.), 'conda'
environments, reference genomes, data provenance with smart checksumming for large files,
parameter choices, random seeds, and hardware specifications. Generates executable scripts
with 'Docker', 'Singularity', and 'renv' configurations. Integrates with workflow managers
('Nextflow', 'Snakemake', 'WDL', 'CWL') to ensure complete reproducibility of computational
research workflows.

Abu SAADAT

Capsule

Comprehensive Reproducibility Framework for R and Bioinformatics
Analysis

.save_reference_registry function

<dl><dt>registry</dt>
<dd>List. Registry data to save</dd>
<dt>registry_file</dt>
<dd>Character. Path to registry file</dd></dl>

Arguments

Save Reference Registry — .save_reference_registry

<dl>

<dt>registry</dt>
<dd>List. Registry data to save</dd>


<dt>registry_file</dt>
<dd>Character. Path to registry file</dd>

</dl>

.save_reference_registry: Save Reference Registry

Description

Usage

Arguments