.save_registry

Internal function to save the provenance registry

internal

A comprehensive reproducibility framework designed for R and bioinformatics
workflows. Automatically captures the entire analysis environment including R session
info, package versions, external tool versions ('Samtools', 'STAR', 'BWA', etc.), 'conda'
environments, reference genomes, data provenance with smart checksumming for large files,
parameter choices, random seeds, and hardware specifications. Generates executable scripts
with 'Docker', 'Singularity', and 'renv' configurations. Integrates with workflow managers
('Nextflow', 'Snakemake', 'WDL', 'CWL') to ensure complete reproducibility of computational
research workflows.

Abu SAADAT

Capsule

Comprehensive Reproducibility Framework for R and Bioinformatics
Analysis

.save_registry function

<dl><dt>registry</dt>
<dd>List. Registry data to save</dd>
<dt>registry_file</dt>
<dd>Character. Path to registry file</dd></dl>

Arguments

Save Provenance Registry — .save_registry

<dl>

<dt>registry</dt>
<dd>List. Registry data to save</dd>


<dt>registry_file</dt>
<dd>Character. Path to registry file</dd>

</dl>

.save_registry: Save Provenance Registry

Description

Usage

Arguments