capture_system_libraries

Capture version information for system libraries that R packages depend on
(e.g., libcurl, libxml2, BLAS/LAPACK implementations)

A comprehensive reproducibility framework designed for R and bioinformatics
workflows. Automatically captures the entire analysis environment including R session
info, package versions, external tool versions ('Samtools', 'STAR', 'BWA', etc.), 'conda'
environments, reference genomes, data provenance with smart checksumming for large files,
parameter choices, random seeds, and hardware specifications. Generates executable scripts
with 'Docker', 'Singularity', and 'renv' configurations. Integrates with workflow managers
('Nextflow', 'Snakemake', 'WDL', 'CWL') to ensure complete reproducibility of computational
research workflows.

Abu SAADAT

Capsule

Comprehensive Reproducibility Framework for R and Bioinformatics
Analysis

capture_system_libraries function

<dl><dt>output_file</dt>
<dd>Character. Path to save library info. If NULL, returns as list.</dd></dl>

Arguments

Capture System Libraries — capture_system_libraries

<dl>

<dt>output_file</dt>
<dd>Character. Path to save library info. If NULL, returns as list.</dd>

</dl>

capture_system_libraries: Capture System Libraries

Description

Usage

Value

Arguments

Examples