get_conda_env_info

Retrieve information about tracked conda environments

A comprehensive reproducibility framework designed for R and bioinformatics
workflows. Automatically captures the entire analysis environment including R session
info, package versions, external tool versions ('Samtools', 'STAR', 'BWA', etc.), 'conda'
environments, reference genomes, data provenance with smart checksumming for large files,
parameter choices, random seeds, and hardware specifications. Generates executable scripts
with 'Docker', 'Singularity', and 'renv' configurations. Integrates with workflow managers
('Nextflow', 'Snakemake', 'WDL', 'CWL') to ensure complete reproducibility of computational
research workflows.

Abu SAADAT

Capsule

Comprehensive Reproducibility Framework for R and Bioinformatics
Analysis

get_conda_env_info function

<dl><dt>env_name</dt>
<dd>Character. Specific environment name, or NULL for all</dd>
<dt>registry_file</dt>
<dd>Character. Path to conda registry</dd></dl>

Arguments

Get Conda Environment Info — get_conda_env_info

<dl>

<dt>env_name</dt>
<dd>Character. Specific environment name, or NULL for all</dd>


<dt>registry_file</dt>
<dd>Character. Path to conda registry</dd>

</dl>

get_conda_env_info: Get Conda Environment Info

Description

Usage

Value

Arguments