get_seed_history

A comprehensive reproducibility framework designed for R and bioinformatics
workflows. Automatically captures the entire analysis environment including R session
info, package versions, external tool versions ('Samtools', 'STAR', 'BWA', etc.), 'conda'
environments, reference genomes, data provenance with smart checksumming for large files,
parameter choices, random seeds, and hardware specifications. Generates executable scripts
with 'Docker', 'Singularity', and 'renv' configurations. Integrates with workflow managers
('Nextflow', 'Snakemake', 'WDL', 'CWL') to ensure complete reproducibility of computational
research workflows.

Abu SAADAT

Capsule

Comprehensive Reproducibility Framework for R and Bioinformatics
Analysis

get_seed_history function

<dl><dt>analysis_name</dt>
<dd>Character. Specific analysis name, or NULL for all</dd>
<dt>registry_file</dt>
<dd>Character. Path to seed registry</dd></dl>

Arguments

Get Seed History — get_seed_history

<dl>

<dt>analysis_name</dt>
<dd>Character. Specific analysis name, or NULL for all</dd>


<dt>registry_file</dt>
<dd>Character. Path to seed registry</dd>

</dl>

get_seed_history: Get Seed History

Description

Usage

Value

Arguments