Capsule (version 0.2.0)

track_external_tools: Track External Bioinformatics Tools

Description

Track versions of external command-line tools commonly used in bioinformatics pipelines (e.g., samtools, STAR, BWA, etc.)

Usage

track_external_tools(tools = NULL, registry_file)

Value

List containing tool version information

Arguments

tools

Character vector of tool names to track. If NULL, tracks common tools.

registry_file

Character. Path to tools registry. Default ".capsule/tools_registry.json"

Examples

if (FALSE) {
# Track common bioinformatics tools
track_external_tools(registry_file = tempfile(fileext = ".json"))

# Track specific tools
track_external_tools(c("samtools", "bwa", "STAR"),
                     registry_file = tempfile(fileext = ".json"))
}