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CatDyn (version 1.1-1)

Fishery Stock Assessment by Catch Dynamics Models

Description

Based on fishery Catch Dynamics instead of fish Population Dynamics (hence CatDyn) and using high-frequency or medium-frequency catch in biomass or numbers, fishing nominal effort, and mean fish body weight by time step, from one or two fishing fleets, estimate stock abundance, natural mortality rate, and fishing operational parameters. It includes methods for data organization, plotting standard exploratory and analytical plots, predictions, for 100 types of models of increasing complexity, and 72 likelihood models for the data.

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Version

Install

install.packages('CatDyn')

Monthly Downloads

171

Version

1.1-1

License

GPL (>= 2)

Maintainer

Ruben Roa-Ureta

Last Published

January 2nd, 2019

Functions in CatDyn (1.1-1)

CatDynCor

Correlation Plot Among Parameter Estimates
CatDynFit

Fit CatDyn Models by Maximum Likelihood
catdynexp

Exploratory Evaluation of Initial Values of CatDyn Models
cor2cov

Correlation Matrix to Covariance Matrix Conversion
CatDynData

Class Attribute of CatDyn Data Object
plot.CatDynMod

Examination of Results from Fitting Catch Dynamic Models
CatDynPred

Predictions from a Generalized Depletion (Catch Dynamics) Model
twelver

Sport Fishing for Eel Juveniles in Taiwan
CatDynSum

Summary Table for Generalized Depletion (Catch Dynamics) Model Comparison
lolgahi

Industrial Trawling Data from the Squid Fishery of the Falkland Islands
m.hoenig

Marine animals natural mortality and longevity database
deltamethod

First-order Taylor Series Expansion of Functions of Random Variables
CatDynMod

Class Attribute of Model Output Object
CatDyn-package

Fisheries Stock Assessment by Generalized Depletion (Catch Dynamics) Models
CatDynBSD

Calculate Annual Biomass and its Standard Error
gayhake

Industrial and Artisanal Catch and Effort Data from the Chilean Hake Fishery
as.CatDynData

Data Object for the Estimation of Catch Dynamic Models
CatDynPar

Table of Parameter Estimates and Coefficients of Variation
gayhakelm

Length and Month data of Chilean hake from Artisanal Fishery
gayhakelw

Length and Weight data of Chilean hake from Artisanal Fishery
catdyn

Class Attribute of Numerically Fit CatDyn Model Objects
M.Hoenig

Estimate natural mortality rate from longevity data
mobw.kg

Mean body weight per month
plot.CatDynData

Exploratory Analysis of Catch and Effort Fisheries Data
plot.CatDynExp

Exploratory Modeling of Fisheries with Catch Dynamic (generalized depletion) Models
CatDynExp

Class Attribute of Exploratory Analysis Object