This class represents the results of a linear model-based test for
systematic changes in a per-gene statistic by chromosome band
annotation. The linearMTest
function returns an
instance of ChrMapLinearMResult
when given a parameter object
of class ChrMapLinearMParams
. Most slots can be queried using
accessors.
new("ChrMapLinearMResult", ...)
, but is more commonly created
by callinf linearMTest
pvalues
:"numeric"
, with the
p-values for each term.
pvalue.order
:"integer"
, the
order vector (increasing) for the p-values.
effectSize
:"numeric"
, with
the effect size for each term.
annotation
:"character"
~~ geneIds
:"ANY"
~~ testName
:"character"
~~ pvalueCutoff
:"numeric"
~~ minSize
:"integer"
~~ testDirection
:"character"
~~ conditional
:"logical"
~~ graph
:"graph"
~~ gsc
:"GeneSetCollection"
~~ "LinearMResult"
, directly. Class "LinearMResultBase"
, by class
"LinearMResult", distance 2.linearMTest
, ChrMapLinearMParams
,
LinearMResult
,
LinearMResultBase
,
showClass("ChrMapLinearMResult")
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