HyperGResultBase-class: Class "HyperGResultBase"
Description
This VIRTUAL class represents common elements of the return values
of generic functions like hyperGTest. All subclasses are
intended to implement the accessor functions documented at
HyperGResult-accessors.
Objects from the Class
A virtual Class: No objects may be
created from it.Slots
annotation:- Object of class
"character"
giving the name of the annotation data package used. geneIds:- Object of class
"ANY" (usually
a character vector, but sometimes an integer vector).
The input vector of gene identifiers intersected with the
universe of gene identifiers used in the computation. testName:- Object of class
"character"
identifying the testing method used.
pvalueCutoff:- Numeric value used by the
testing method as a p-value cutoff. Not all testing
methods use this. Also used by the
show method to
count number of significant terms. testDirection:- A string indicating whether the test
performed was for overrepresentation (
"over") or
underrepresentation("under").