LinearMResultBase-class: Class "LinearMResultBase"
Description
This VIRTUAL class represents common elements of the return values of
generic functions like linearMTest. These elements are
essentially those that are passed through from the input
parameters. See LinearMResult for a concrete result
class with the basic outputs.
Objects from the Class
A virtual Class: No objects may be created from it.Slots
All of these slots correspond to slots in
the LinearMParams class.
annotation:- Object of class
"character" ~~ geneIds:- Object of class
"ANY" ~~ testName:- Object of class
"character" ~~ pvalueCutoff:- Object of class
"numeric" ~~ minSize:- Object of class
"integer" ~~ testDirection:- Object of class
"character" ~~ conditional:- Object of class
"logical" ~~ graph:- Object of class
"graph" ~~ gsc:- Object of class
"GeneSetCollection" ~~
Methods
- annotation
signature(object = "LinearMResultBase"): ... - conditional
signature(r = "LinearMResultBase"): ... - description
signature(object = "LinearMResultBase"): ... - geneIdsByCategory
signature(object = "LinearMResultBase"): ... - geneIds
signature(object = "LinearMResultBase"): ... - geneIdUniverse
signature(r = "LinearMResultBase"): ... - geneMappedCount
signature(r = "LinearMResultBase"): ... - pvalueCutoff
signature(r = "LinearMResultBase"): ... - show
signature(object = "LinearMResultBase"): ... - sigCategories
signature(r = "LinearMResultBase"): ... - summary
signature(object = "LinearMResultBase"): ... - testDirection
signature(r = "LinearMResultBase"):
... - conditional
signature(object = "LinearMResultBase"): ... - testName
signature(r = "LinearMResultBase"): ... - universeCounts
signature(r = "LinearMResultBase"): ... - universeMappedCount
signature(r = "LinearMResultBase"): ...