Category (version 2.38.0)

universeBuilder: Return a vector of gene identifiers with category annotations

Description

Return all gene ids that are annotated at one or more terms in the category. If the universeGeneIds slot of p has length greater than zero, then the intersection of the gene ids specified in that slot and the normal return value is given.

Usage

universeBuilder(p)

Arguments

p

A subclass of HyperGParams-class

Value

A vector of gene identifiers.

Details

End users should not call this directly. This method gets called from hyperGTest. To add support for a new category, a new method for this generic must be defined. Its signature should match a subclass of HyperGParams-class appropriate for the new category.

See Also

hyperGTest HyperGParams-class