CNOlistToy2

This data object contains the data associated with the Toy Model example from the package vignette, already loaded and formatted as a CNOlist object, and modified to contain 2 time points.  The second time point is such a way that all  of the signals stay as in time 1, except for cJun and Jnk which go to zero.

datasets

This package does optimisation of boolean logic networks of signalling pathways based on a previous knowledge network and a set of data upon perturbation of the nodes in the network.

T Cokelaer

CellNOptR

Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.

CNOlistToy2 function

CNOlistToy is a list with the fields "namesCues" (character vector), "namesStimuli" (character vector), "namesInhibitors" (character vector), "namesSignals" (character vector), "timeSignals" (numerical vector), "valueCues" (numerical matrix), "valueInhibitors" (numerical matrix), "valueStimuli"(numerical matrix), "valueSignals"(numerical matrix).

Format

This data and model is extracted from the Matlab version of CellNOpt1.0 (<a href="http://www.ebi.ac.uk/saezrodriguez/software.html#CellNetOptimizer">http://www.ebi.ac.uk/saezrodriguez/software.html#CellNetOptimizer</a>).

CNOlistToy2: Toy data with 2 time points

Description

Usage

Arguments

Format

Source

References