ToyModel2

This data object contains the Toy model from the package vignette, already loaded and formatted as a Model object, and modified for the 2 time points version (a negative fedback between cJun and Jnk (!cJun=Jnk) is added).

datasets

This package does optimisation of boolean logic networks of signalling pathways based on a previous knowledge network and a set of data upon perturbation of the nodes in the network.

T Cokelaer

CellNOptR

Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.

ToyModel2 function

ToyModel is a list with fields "reacID" (character vector), "namesSpecies" (character vector), "interMat" (numerical matrix), "notMat"(numerical matrix).

Format

This data and model is extracted from the Matlab version of CellNOpt1.0 (<a href="http://www.ebi.ac.uk/saezrodriguez/software.html#CellNetOptimizer">http://www.ebi.ac.uk/saezrodriguez/software.html#CellNetOptimizer</a>).

ToyModel2: Toy model

Description

Usage

Arguments

Format

Source

References