graph2sif


a graph, as generated using <a rd-options="" href="/link/sif2graph?package=CellNOptR&version=1.18.0" data-mini-rdoc="CellNOptR::sif2graph">sif2graph</a>


graph


if writeSif=FALSE (default) the SIF file is not saved. If writeSif=TRUE it is saved.


writeSif


the name of the SIF file saved if writeSif=TRUE. Default is Model.sif.


filename


  This function converts a network form graph format to SIF format. The resulting table can also be saved in a SIF file.


This package does optimisation of boolean logic networks of signalling pathways based on a previous knowledge network and a set of data upon perturbation of the nodes in the network.

T Cokelaer

CellNOptR

Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.

graph2sif function

a graph, as generated using <a href="sif2graph" rd-options="">sif2graph</a>

if writeSif=FALSE (default) the SIF file is not saved. If writeSif=TRUE it is saved.

the name of the SIF file saved if writeSif=TRUE. Default is Model.sif.

This function converts a network form graph format to SIF format. The resulting table can also be saved in a SIF file.

Convert graph to SIF

a table with all the links in the model in the format sourceNode-tab-sign-tab-targetNode

graph2sif: Convert graph to SIF

Description

Usage

Arguments

Value

Details

See Also