ChIPQC (version 1.6.1)

plotSSD-methods: Generate SSD plot

Description

Generate SSD metric plot. If blacklists supplied, will generate SSD prior and post blacklisting

Methods

signature(object = "ChIPQCexperiment", facet=T, facetBy=c("Tissue","Factor"))

Generate SSD metric plot for all samples in experiment. If blacklists supplied, will generate SSD prior and post blacklisting

signature(object = "ChIPQCsample")

Generate SSD metric plot for single sample. If blacklists supplied, will generate SSD prior and post blacklisting

See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

Examples

data(example_QCexperiment)
plotSSD(exampleExp,facetBy=c("Tissue","Factor"))
plotSSD(QCsample(exampleExp,1))
data(tamoxifen_QC)
plotSSD(tamoxifen,facetBy=c("Tissue","Condition"))