ChIPQC (version 1.8.2)

ChIPQCreport-methods: Generate a summary QC report

Description

Generate an HTML summary QC report.

Methods

signature(experiment = "ChIPQCexperiment", facet=TRUE, reportName="ChIPQC", reportFolder="ChIPQCreport", facetBy=c("Tissue","Factor","Condition","Treatment"), colourBy=c("Replicate"))

Generates an summary QC report for the experiment in HTML format.

experiment

ChIPQCexperiment object

facet

logical indicating whether or not to facet using experimental metadata.

reportName

filename of main report file (.html).

reportFolder

directory name where plot graphics will be saved

facetBy

metadata fields to use for faceting

colourBy

metadata field to color by

signature(sample = "ChIPQCsample", reportName="ChIPQC", reportFolder="ChIPQCreport",)

Generate a summary QC report for a sample in HTML format.

sample

ChIPQCsample object

reportName

filename of main report file (.html).

reportFolder

directory name where plot graphics will be saved

See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

Examples

data(example_QCexperiment)
ChIPQCreport(exampleExp,facetBy=c("Tissue","Factor"))
#report in ChIPQCreport/Example.html

data(tamoxifen_QC)
ChIPQCreport(tamoxifen,facetBy="Tissue",colourBy="Condition")
#report in ChIPQCreport/ChIPQC.html

ChIPQCreport(tamoxifen,facetBy=c("Tissue","Condition"))
#report in ChIPQCreport/ChIPQC.html