Retrieve a vector of the duplication rates for each sample in an experiment. A read is considered duplicated if another read maps to the same genomic location; the duplication rate is the number of duplicated reads divided by the total number of reads for a sample. If bFiltered=TRUE (or is missing), only reads that pass the mapping quality filter for each sample are included. if bFiltered=FALSE, all reads for each sample will be included.
signature(object = "ChIPQCsample", bFiltered)
Retrieve the duplication rate for a sample. A read is considered duplicated if another read maps to the same genomic location; the duplication rate is the number of duplicated reads divided by the total number of reads for the sample. If bFiltered=TRUE (or is missing), only reads that pass the mapping quality filter for the sample are included. if bFiltered=FALSE, all reads for the sample will be included.