ChIPQC (version 1.8.2)

ribl-methods: Retrieve numbers of reads overlapping blacklisted regions

Description

Retrieve the numbers of reads overlapping blacklisted regions.

Methods

signature(object = "ChIPQCexperiment")

Retrieve a vector of the numbers of reads overlapping blacklisted regions for each sample in an experiment.

signature(object = "ChIPQCsample")

Retrieve the number of reads overlapping blacklisted regions in a sample.

See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

Examples

data(example_QCexperiment)
ribl(exampleExp)
ribl(QCsample(exampleExp,1))