ChIPQC (version 1.8.2)

rip-methods: Retrieve numbers of reads overlapping peaks

Description

Retrieve the numbers of reads overlapping peaks.

Methods

signature(object = "ChIPQCexperiment")

Retrieve a vector of the numbers of reads overlapping peaks for each sample in an experiment.

signature(object = "ChIPQCsample")

Retrieve the number of reads overlapping peaks in a sample.

See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

Examples

data(example_QCexperiment)
rip(exampleExp)
rip(QCsample(exampleExp,1))