ChIPQC (version 1.8.2)

ssd-methods: Retrieve SSD (squared sum of deviations) values of peak coverage

Description

Retrieve SSD (squared sum of deviations) values of peak coverage density.

Methods

signature(object = "ChIPQCexperiment")

Retrieve a vector of SSD values, one for each sample in an experiment.

signature(object = "ChIPQCsample")

Retrieve the SSD (squared sum of deviations) for a sample, computed from the standard deviation of the coveragehistogram.

See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

Examples

data(example_QCexperiment)
ssd(exampleExp)
ssd(QCsample(exampleExp,1))