ChIPpeakAnno (version 3.4.0)

ExonPlusUtr.human.GRCh37: Gene model with exon, 5' UTR and 3' UTR information for human sapiens (GRCh37) obtained from biomaRt

Description

Gene model with exon, 5' UTR and 3' UTR information for human sapiens (GRCh37) obtained from biomaRt

Usage

data(ExonPlusUtr.human.GRCh37)

Arguments

Format

RangedData with slot start holding the start position of the exon, slot end holding the end position of the exon, slot rownames holding ensembl transcript id and slot space holding the chromosome location where the gene is located. In addition, the following variables are included.
strand
1 for positive strand and -1 for negative strand
description
description of the transcript
ensembl_gene_id
gene id
utr5start
5' UTR start
utr5end
5' UTR end
utr3start
3' UTR start
utr3end
3' UTR end

Details

used in the examples Annotation data obtained by: mart = useMart(biomart = "ensembl", dataset = "hsapiens_gene_ensembl") ExonPlusUtr.human.GRCh37 = getAnnotation(mart=human, featureType="ExonPlusUtr")

Examples

Run this code
data(ExonPlusUtr.human.GRCh37)
slotNames(ExonPlusUtr.human.GRCh37)

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