ExonPlusUtr.human.GRCh37:
Gene model with exon, 5' UTR and 3' UTR information for human sapiens (GRCh37)
obtained from biomaRt
Description
Gene model with exon, 5' UTR and 3' UTR information for human sapiens (GRCh37)
obtained from biomaRt
Usage
data(ExonPlusUtr.human.GRCh37)
Arguments
Format
RangedData with slot start holding the start position of the exon, slot end
holding the end position of the exon, slot rownames holding ensembl
transcript id and slot space holding the chromosome location where the gene
is located. In addition, the following variables are included.
strand
1 for positive strand and -1 for negative strand
description
description of the transcript
ensembl_gene_id
gene id
utr5start
5' UTR start
utr5end
5' UTR end
utr3start
3' UTR start
utr3end
3' UTR end
Details
used in the examples
Annotation data obtained by:
mart = useMart(biomart = "ensembl", dataset = "hsapiens_gene_ensembl")
ExonPlusUtr.human.GRCh37 =
getAnnotation(mart=human, featureType="ExonPlusUtr")