ChIPpeakAnno (version 3.6.4)

annotatedPeak: Annotated Peaks

Description

TSS annotated putative STAT1-binding regions that are identified in un-stimulated cells using ChIP-seq technology (Robertson et al., 2007)

Usage

data(annotatedPeak)

Details

obtained by data(TSS.human.GRCh37) data(myPeakList) annotatePeakInBatch(myPeakList, AnnotationData = TSS.human.GRCh37, output="b", multiple=F)

Examples

data(annotatedPeak)
str(annotatedPeak) 
if (interactive()) {
y = annotatedPeak$distancetoFeature[!is.na(annotatedPeak$distancetoFeature)]
hist(as.numeric(as.character(y)), 
     xlab="Distance To Nearest TSS", main="", breaks=1000, 
ylim=c(0, 50), xlim=c(min(as.numeric(as.character(y)))-100, 
max(as.numeric(as.character(y)))+100))
}