getBindCor

An object of class <code>ReadCounts</code>

data

Maximum lag to use in cross-correlation calculation.

max.lag

Function to use to summarise cross-correlation across chromosomes.

summary

Logical indicating whether to plot cross-correlation.

plot


  This function calculates the cross-correlation between read counts on forward and reverse strand.


utilities

ChIPseqR identifies protein binding sites from ChIP-seq
and nucleosome positioning experiments. The model used to
describe binding events was developed to locate nucleosomes but
should flexible enough to handle other types of experiments as
well.

Peter Humburg

ChIPseqR

Identifying Protein Binding Sites in High-Throughput Sequencing
Data

getBindCor function

An object of class <code><linkS4class>ReadCounts</linkS4class></code>

This function calculates the cross-correlation between read counts on forward and reverse strand.

getBindCor: Calculate cross-correlation between read counts

Description

Usage

Arguments

Value

Details

See Also