pickPeak

score

All values in <code>score</code> below this value are ignored.

threshold

Offset to add to the determined peak locations.

offset

Logical. If this is <code>FALSE</code> (the default) for each region that exceeds the threshold
  only the global maximum is returned. Otherwise local maxima are returned as well.


  Given a vector of scores and a threshold, this function finds all peaks 
  that exceed the threshold.


misc

ChIPseqR identifies protein binding sites from ChIP-seq
and nucleosome positioning experiments. The model used to
describe binding events was developed to locate nucleosomes but
should flexible enough to handle other types of experiments as
well.

Peter Humburg

ChIPseqR

Identifying Protein Binding Sites in High-Throughput Sequencing
Data

pickPeak function

Given a vector of scores and a threshold, this function finds all peaks 
  that exceed the threshold.

Identify peaks above a given threshold

The same peak locations that are returned for <code>sub = FALSE</code>.

peaks

A list with one component for each entry in <sQuote>peaks</sQuote> giving the location
  of local maxima.

pickPeak: Identify peaks above a given threshold

Description

Usage

Arguments

Value

See Also