.plotReads

A two column matrix with read counts (as produced by <code><a rd-options="" href="/link/strandPileup?package=ChIPseqR&version=1.26.0" data-mini-rdoc="ChIPseqR::strandPileup">strandPileup</a></code>).

Character string indicating whether to plot the total number of reads on both strands or the ratio between them.

scale

Logical indicating whether to use log read counts.


  Creates an image of all read counts for a chromosome.


internal

hplot

plotReads

ChIPseqR identifies protein binding sites from ChIP-seq
and nucleosome positioning experiments. The model used to
describe binding events was developed to locate nucleosomes but
should flexible enough to handle other types of experiments as
well.

Peter Humburg

ChIPseqR

Identifying Protein Binding Sites in High-Throughput Sequencing
Data

plotReads function

A two column matrix with read counts (as produced by <code><a href="strandPileup" rd-options="">strandPileup</a></code>).

Creates an image of all read counts for a chromosome.

plotReads: Plot compact representation of read counts on a chromosome

Description

Usage

Arguments

Value

Details

References

See Also