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ChIPtest (version 1.0)

Nonparametric Methods for Identifying Differential Enrichment Regions with ChIP-Seq Data

Description

Nonparametric Tests to identify the differential enrichment region for two conditions or time-course ChIP-seq data. It includes: data preprocessing function, estimation of a small constant used in hypothesis testing, a kernel-based two sample nonparametric test, two assumption-free two sample nonparametric test.

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Version

Install

install.packages('ChIPtest')

Monthly Downloads

32

Version

1.0

License

GPL (>= 2.15.1)

Maintainer

Vicky Wu

Last Published

July 20th, 2016

Functions in ChIPtest (1.0)

NormTransformation

Variance-stabilizing transformation (VST) procedure
data4

Input data (matrix) for condition B
TS_twosample

Three Nonparametric Test Statistics for two sample ChIP-seq data
TS_kernel

Calculate the Test Statistics for kernel-based nonparametric test.
data1

Input data (matrix) for condition A
ChIPtest_1.0-package

Nonparametric Methods for Identifying Differential Enrichment Regions with ChIP-seq Data