Characterization (version 3.0.0)

createCaseSeriesSettings: Create aggregate covariate study settings

Description

Create aggregate covariate study settings

Usage

createCaseSeriesSettings(
  targetIds,
  outcomeIds,
  limitToFirstInNDays = 99999,
  minPriorObservation = 0,
  outcomeWashoutDays = 0,
  riskWindowStart = 1,
  startAnchor = "cohort start",
  riskWindowEnd = 365,
  endAnchor = "cohort start",
  caseCovariateSettings = createDuringCovariateSettings(useConditionGroupEraDuring =
    TRUE, useDrugGroupEraDuring = TRUE, useProcedureOccurrenceDuring = TRUE,
    useDeviceExposureDuring = TRUE, useMeasurementDuring = TRUE, useObservationDuring =
    TRUE, useVisitConceptCountDuring = TRUE),
  casePreTargetDuration = 365,
  casePostOutcomeDuration = 365
)

Value

A list with the settings

Arguments

targetIds

A list of cohortIds for the target cohorts

outcomeIds

A list of cohortIds for the outcome cohorts

limitToFirstInNDays

whether to limit each target cohort to the first entry into the cohort per N days per subject

minPriorObservation

The minimum time (in days) in the database a patient in the target cohorts must be observed prior to index

outcomeWashoutDays

Patients with the outcome within outcomeWashout days prior to index are excluded from the risk factor analysis

riskWindowStart

The start of the risk window (in days) relative to the `startAnchor`.

startAnchor

The anchor point for the start of the risk window. Can be `"cohort start"` or `"cohort end"`.

riskWindowEnd

The end of the risk window (in days) relative to the `endAnchor`.

endAnchor

The anchor point for the end of the risk window. Can be `"cohort start"` or `"cohort end"`.

caseCovariateSettings

An object created using createDuringCovariateSettings

casePreTargetDuration

The number of days prior to case index we use for FeatureExtraction

casePostOutcomeDuration

The number of days prior to case index we use for FeatureExtraction

See Also

Other Aggregate: createRiskFactorSettings(), createTargetBaselineSettings()

Examples

caseSeriesSetting <- createCaseSeriesSettings(
  targetIds = c(1,2),
  outcomeIds = c(3),
  limitToFirstInNDays = 365,
  minPriorObservation = 365,
  outcomeWashoutDays = 90,
  riskWindowStart = 1,
  startAnchor = "cohort start",
  riskWindowEnd = 365,
  endAnchor = "cohort start",
  casePreTargetDuration = 365,
  casePostOutcomeDuration = 365
)