ChemoSpec (version 1.51-0)

plotScree: Scree Plots of PCA Results for a Spectra Object

Description

Functions to draw a traditional scree plot or an alternative that is perhaps more useful. These illustrate the importance of the components in a PCA analysis.

Usage

plotScree(pca, title = "no title provided", ...)
plotScree2(pca, title = "no title provided", ...)

Value

None. Side effect is a plot.

Rdversion

1.1

Details

If you add $method to the PCA results from other packages, this will plot a scree plot for any PCA results, not just those from "Spectra" objects.

References

http://academic.depauw.edu/~hanson/ChemoSpec/ChemoSpec.html The idea for the alternative style plot came from the NIR-Quimiometria blog by jrcuesta, at http://http://www.r-bloggers.com/pca-for-nir-spectra_part-004-projections/

Examples

data(SrE.IR)
results <- classPCA(SrE.IR, choice = "noscale")
plotScree(results, title = "Serenoa repens IR Spectra")
plotScree2(results, title = "Serenoa repens IR Spectra")