plotScree2

<ul>
<li>An object of class <code><a rd-options="" href="/link/prcomp?package=ChemoSpec&version=5.1.48" data-mini-rdoc="ChemoSpec::prcomp">prcomp</a></code>, modified to include a
list element called <code>$method</code>, a character string describing the
pre-processing carried out and the type of PCA performed (it appears on the
plot). This is automatically provided if <code>ChemoSpec</code> functions
<code><a rd-options="ChemoSpec" href="/link/c_pcaSpectra?package=ChemoSpec&version=5.1.48&to=ChemoSpec" data-mini-rdoc="ChemoSpec::c_pcaSpectra">c_pcaSpectra</a></code> or <code><a rd-options="ChemoSpec" href="/link/r_pcaSpectra?package=ChemoSpec&version=5.1.48&to=ChemoSpec" data-mini-rdoc="ChemoSpec::r_pcaSpectra">r_pcaSpectra</a></code>
were used to create <code>pca</code>.</li>
</ul>

Additional parameters to be passed to plotting functions.

&#8230;

This function is deprecated. Please use <code>plotScree(pca, style = 'alt')</code>

A collection of functions for top-down exploratory data analysis
of spectral data including nuclear magnetic resonance (NMR), infrared (IR),
Raman, X-ray fluorescence (XRF) and other similar types of spectroscopy.
Includes functions for plotting and inspecting spectra, peak alignment,
hierarchical cluster analysis (HCA), principal components analysis (PCA) and
model-based clustering. Robust methods appropriate for this type of
high-dimensional data are available. ChemoSpec is designed for structured
experiments, such as metabolomics investigations, where the samples fall into
treatment and control groups. Graphical output is formatted consistently for
publication quality plots. ChemoSpec is intended to be very user friendly and
to help you get usable results quickly. A vignette covering typical operations
is available.

Bryan Hanson

ChemoSpec

Exploratory Chemometrics for Spectroscopy

Bryan A. Hanson

Mike Bostock

Matt Keinsley

plotScree2 function

<ul>
<li>An object of class <code><a rd-options='' href='prcomp'>prcomp</a></code>, modified to include a
list element called <code>$method</code>, a character string describing the
pre-processing carried out and the type of PCA performed (it appears on the
plot). This is automatically provided if <code>ChemoSpec</code> functions
<code><a rd-options='ChemoSpec' href='c_pcaSpectra'>c_pcaSpectra</a></code> or <code><a rd-options='ChemoSpec' href='r_pcaSpectra'>r_pcaSpectra</a></code>
were used to create <code>pca</code>.</li>
</ul>

plotScree2: Alternate Style Scree Plot DEPRECATED

Description

Usage

Arguments

Value