.plotHCA

Internal function. This function plots the results of an HCA analysis.

internal

Functions supporting the common needs of packages 'ChemoSpec' and 'ChemoSpec2D'.

Bryan Hanson

ChemoSpecUtils

Functions Supporting Packages ChemoSpec and ChemoSpec2D

Bryan A. Hanson

Tejasvi Gupta

.plotHCA function

<dl><dt>spectra</dt>
<dd>An object of S3 class <code>ChemoSpec::Spectra()</code> or <code>ChemoSpec2D::Spectra2D()</code>.</dd>
<dt>hclst</dt>
<dd>A <code><a href="/link/hclust?package=ChemoSpecUtils&version=1.0.5" data-mini-rdoc="ChemoSpecUtils::hclust">hclust</a></code> object.</dd>
<dt>sub.title</dt>
<dd>A character string for the subtitle.</dd>
<dt>use.sym</dt>
<dd>Logical; if true, the color scheme will be black and
lower-case letters will be used to indicate group membership.
Applies to <code>Spectra</code> objects only.</dd>
<dt>leg.loc</dt>
<dd>Character; if <code>"none"</code> no legend will be drawn.
Otherwise, any string acceptable to <code><a href="/link/legend?package=ChemoSpecUtils&version=1.0.5" data-mini-rdoc="ChemoSpecUtils::legend">legend</a></code>.</dd>
<dt>...</dt>
<dd>Parameters to be passed to the plotting routines. Applies to base graphics only.</dd></dl>

Arguments

Bryan A. Hanson (DePauw University).

Author

Plot Dendrogram for Spectra or Spectra2D Object — .plotHCA

<dl>

<dt>spectra</dt>
<dd>An object of S3 class <code>ChemoSpec::Spectra()</code> or <code>ChemoSpec2D::Spectra2D()</code>.</dd>


<dt>hclst</dt>
<dd>A <code><a href='https://rdrr.io/r/stats/hclust.html'>hclust</a></code> object.</dd>


<dt>sub.title</dt>
<dd>A character string for the subtitle.</dd>


<dt>use.sym</dt>
<dd>Logical; if true, the color scheme will be black and
lower-case letters will be used to indicate group membership.
Applies to <code>Spectra</code> objects only.</dd>


<dt>leg.loc</dt>
<dd>Character; if <code>"none"</code> no legend will be drawn.
Otherwise, any string acceptable to <code><a href='https://rdrr.io/r/graphics/legend.html'>legend</a></code>.</dd>


<dt>...</dt>
<dd>Parameters to be passed to the plotting routines. Applies to base graphics only.</dd>

</dl>

.plotHCA: Plot Dendrogram for Spectra or Spectra2D Object

Description

Usage

Value

Arguments

Author