Plot expression data as tracks in the UCSC genome browser
Map a data matrix onto chromosome coordinates
Chromosome 22 subset of ALL data for ALL1/AF4 and E2A/PBX1
The ALLs.chr22 ExpressionSet, reformatted as a ChrStrandData object
Plot data as an annotated heat map along a chromosome
Cytoband display information
Class to contain data associated with genome locations for a specific chromosome.
Generate chromosome-based subset matrices from the mapped data
structures generated by makeChrStrandData
Class containing a mapping between plot location and probe or gene identifier.
Plot ChrStrandMatrix objects as heat maps along a chromosome
Identify the probes or genes plotted using plotChrMap
makeChrStrandData-methods
Map a data matrix onto chromosome coordinates
Retrieve chromosome names from an object.
Class to contain data associated with chromosome coordinates across a
whole genome.
Cytoband location information
Draw a heatmap and dendrogram for a strand-specific data matrix
generated by createChrMatrix
Retrieve strand information from a ChrStrandMatrix object.