DNAStringSetTPR

Curates biological sequences of two restriction enzyme primers or cloning vectors.This cleaning is required for techniques such as cDNA-AFLP.This cleaning is required for techniques such as cDNA-AFLP.

Curates biological sequences massively, quickly, without errors and
without internet connection. Biological sequences curing is performed by
aligning the forward and / or revers primers or ends of cloning vectors with the sequences
to be cleaned. After the alignment, new subsequences are generated without biological fragment
not desired by the user.
Pozzi et al (2020) <doi:10.1007/s00438-020-01671-z>.

Florencia Pozzi

CleanBSequences

Curing of Biological Sequences

DNAStringSetTPR function

<dl><dt>SEQs</dt>
<dd>file with fasta format containing biological sequences that are to be cleaned.</dd>
<dt>PrimerF</dt>
<dd>dnastring containing the foward primer/vector sequences to be removed.</dd>
<dt>PrimerR</dt>
<dd>dnastring containing the reverse primer/vector sequences to be removed.</dd></dl>

Arguments

Florencia I Pozzi, Silvina A. Felitti

Author

Curing of biological sequences — DNAStringSetTPR

<dl>

<dt>SEQs</dt>
<dd>file with fasta format containing biological sequences that are to be cleaned.</dd>


<dt>PrimerF</dt>
<dd>dnastring containing the foward primer/vector sequences to be removed.</dd>


<dt>PrimerR</dt>
<dd>dnastring containing the reverse primer/vector sequences to be removed.</dd>

</dl>

DNAStringSetTPR: Curing of biological sequences

Description

Usage

Value

Arguments

Author

Examples