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Clonality (version 1.20.0)

Clonality testing

Description

Statistical tests for clonality versus independence of tumors from the same patient based on their LOH or genomewide copy number profiles

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Version

Version

1.20.0

License

GPL-3

Maintainer

Irina Ostrovnaya

Last Published

February 15th, 2017

Functions in Clonality (1.20.0)

LRtesting3or4tumors

Clonality testing of 3 or 4 tumors using Likelihood model based on LOH (Loss of Heterozygosity) profiles
genomewidePlots

Plot of the genomewide copy number profiles of a pair of tumors.
Clonality-package

Clonality testing
LOHclonality

Clonality testing using LOH (Loss of Heterozygosity) profiles
clonality.analysis

Clonality testing using copy number data
splitChromosomes

Chromosome splitting
ave.adj.probes

Averaging of adjacent probes in copy number arrays
histogramPlot

Histrograms of Log-Likelihood Ratios
Clonality-internal

Internal Clonality functions
chromosomePlots

Per-chromosome plots of the copy number arrays from a particular patient
ECMtesting

Clonality testing of >=3 tumors using Extended Concordant Mutations (ECM) test based on LOH (Loss of Heterozygosity) profiles