CluMP (version 0.7)

GeneratePanel: Generate an artificial Micro-Panel (longitudinal) Data

Description

This function creates artificial linear or non-linear micro-panel (longitudinal) data coming from generating process with a certain function (linear, quadratic, cubic, exponencial) set of parameters (fixed and random (intercept, slope) effects of time).

Usage

GeneratePanel(n, Param, NbVisit, VisitFreq = NULL, TimeVar = NULL,
  RegModel = NULL, ClusterProb = NULL, Rho = NULL, units = NULL)

Arguments

n

An integer specifying the number of individuals (trajectories) being observed.

Param

Object of data.frame containing regression parameters for each cluster. The dimensions are the various number of generating clusters and the fixed number of parameters. The second dimension (the fixed number of parameters) is given by the type of regression model specified by the argument "RegModel". For more information about the parameters, see documentation of: ParamLinear for linear model, ParamQuadrat for quadratic, ParamCubic for cubic model and ParamExpon for exponential model.

NbVisit

A positive integer numeric input defining expected number of visits. Option is Fixed or Random. Number of visits given by the argument VisitFreq. If VisitFreq is Fixed, the NbVisits defines exact number of visits for all individuals. If VisitFreq is Random then each individual has different number of visits. The number of visits is then generated from the poisson distribution with the mean (lambda) equal to NbVisits.

VisitFreq

String that defines the frequency of visits for each individual. Option is Random or Fixed. If set to Fixed or not defined, each individual has the same number of visits given by NbVisits. If set as Random the number of visits is generated from poisson distribution for each individual with the mean equal to the argument NbVisits. For example if this parameter is set as 5 then the random integer from interval of -5 to 5 is drawned and added to the time variable. Make sure that TimeVar must be lower then the number of days in parameter units.

TimeVar

A positive integer representing daily, time variability of the occurrence of repeated measurement (timepoint) from the regular, fixed occurrence (visit) given by the argument units. For example, if this argument is set to 5 then the random integer from interval of -5 to 5 is drawn and added to the time variable. TimeVar must be lower than the regular frequency of repeat measurement given by the argument units.

RegModel

String specifying the mathematical function for generating trajectory for each of n individuals. Options are linear, quadratic, cubic or exponential. If set to linear or not defined, then each trajectory has a linear trend. If set to quadratic, then each trajectory has a quadratic development in time. If set to cubic then each trajectory has cubic development. If set to exponential, then each trajectory has exponential development.

ClusterProb

Numeric scalar (for 2 clusters) or a vector of numbers (for >2 clusters) defining the probability of each cluster. If not defined, then each cluster has the same occurrence probability.

Rho

A numeric scalar specifying autocorrelation parameter with the values from range 0 to 1. If set as 0 or not define then there is no autocorrelation between the within-individual repeated observations.

units

String defining the units of time series. Options are day, week, month or year.

Value

Generates artificial panel data.

Examples

# NOT RUN {
#Simple Linear model where each individual has 10 observations.
data <- GeneratePanel(n = 100, Param = ParamLinear, NbVisit = 10)

#Exponential model where each individual has 10 observations.
data <- GeneratePanel(100, ParamExpon, NbVisit = 10, VisitFreq = "Fixed", RegModel = "exponential")
PanelPlot(data)

#Cubic model where each individual has random number of observations on daily basis.
#Average number of observation is given by parameter NbVisit.
data <- GeneratePanel(n = 100, Param = ParamCubic, NbVisit = 100, RegModel = "cubic", units = "day")
PanelPlot(data)

#Quadratic model where each individual has random number of observations.
#Each object is observede weekly with variability 2 days.
data <- GeneratePanel(5,ParamQuadrat,NbVisit=50,RegModel="quadratic",units="week",TimeVar=2)
PanelPlot(data)

#Generate panel data with linear trend with 75% objects in first cluster and 25% in the second.
data <- GeneratePanel(n = 100, Param = ParamLinear, NbVisit = 10, ClusterProb = c(0.75, 0.25))
PanelPlot(data, color = "Cluster")
# }

Run the code above in your browser using DataCamp Workspace