genotype2


  This data frame can be obtained using <code><a rd-options="" href="/link/cutEachCol?package=ClustMMDD&version=1.0.4" data-mini-rdoc="ClustMMDD::cutEachCol">cutEachCol</a></code><code>(genotype1[, -11], ploidy = 2)</code> (see <code><a rd-options="" href="/link/genotype1?package=ClustMMDD&version=1.0.4" data-mini-rdoc="ClustMMDD::genotype1">genotype1</a></code>).


Genotype data

Genotype

Alleles

An implementation of a variable selection procedure in clustering by mixture models for discrete data (clustMMDD). Genotype data are examples of such data with two unordered observations (alleles) at each locus for diploid individual. The two-fold problem of variable selection and clustering is seen as a model selection problem where competing models are characterized by the number of clusters K, and the subset S of clustering variables. Competing models are compared by penalized maximum likelihood criteria. We considered asymptotic criteria such as Akaike and Bayesian Information criteria, and a family of penalized criteria with penalty function to be data driven calibrated.

Wilson Toussile

ClustMMDD

Variable Selection in Clustering by Mixture Models for Discrete
Data

genotype2 function

The format is:
 chr [1:1000, 1:20] "109" "107" "105" "101" "106" "106" "107" ..., representing observed alleles for the considered $10$ loci, $2$ 
 column per locus.

Format

Source


  This data frame can be obtained using <code><a rd-options='' href='cutEachCol'>cutEachCol</a></code><code>(genotype1[, -11], ploidy = 2)</code> (see <code><a rd-options='' href='genotype1'>genotype1</a></code>).


A genotype data frame compatible with <code><a rd-options='' href='ClustMMDD'>ClustMMDD</a></code> main functions.


A genotype data frame compatible with <code><a rd-options="" href="/link/ClustMMDD?package=ClustMMDD&version=1.0.4" data-mini-rdoc="ClustMMDD::ClustMMDD">ClustMMDD</a></code> main functions.


genotype2: A genotype data frame compatible with `ClustMMDD` main functions.

Description

Usage

Arguments

Format

Source

Details

See Also

Examples