Learn R Programming

CoFRA (version 0.1001)

Complete Functional Regulation Analysis

Description

Calculates complete functional regulation analysis and visualize the results in a single heatmap. The provided example data is for biological data but the methodology can be used for large data sets to compare quantitative entities that can be grouped. For example, a store might divide entities into cloth, food, car products etc and want to see how sales changes in the groups after some event. The theoretical background for the calculations are provided in New insights into functional regulation in MS-based drug profiling, Ana Sofia Carvalho, Henrik Molina & Rune Matthiesen, Scientific Reports, .

Copy Link

Version

Install

install.packages('CoFRA')

Monthly Downloads

115

Version

0.1001

License

GPL-2 | file LICENSE

Maintainer

Rune Matthiesen

Last Published

December 26th, 2016

Functions in CoFRA (0.1001)

filterData

This function filter a data frame on column named "pro"
iBAQ

data frame containing iBAQ values
HeatMapEnrichment

This function plot a heatmap to summarize the results from complete functional enrichment analysis
getFunctionalCategories

get data frame with functional categories
completeFunctionalRegulationAnalysis

This function performs complete functional regulation analysis
ssLC

Return subString for each item in list