plotAtoms

gapsRes

the atoms to plot, values are <code>sampA</code>, <code>sampP</code> ,
<code>equilA</code>, or <code>equilP</code> to plot sampling or equilibration teop
atome numbers

type


<code>plotAtoms</code> a simple plot of the number of atoms during the sampling period or equilibration periodfrom one of either A or P as specified in <code>type</code>.


Coordinated Gene Activity in Pattern Sets (CoGAPS)
implements a Bayesian MCMC matrix factorization algorithm,
GAPS, and links it to gene set statistic methods to infer biological
process activity.  It can be used to perform sparse matrix factorization on
any data, and when this data represents biomolecules, to do gene set
analysis.

Elana J Fertig

CoGAPS

Coordinated Gene Activity in Pattern Sets

plotAtoms function

<code>plotAtoms</code> a simple plot of the number of atoms during the sampling period or equilibration periodfrom one of either A or P as specified in <code>type</code>.

plotAtoms: `plotAtoms` a simple plot of the number of atoms from one of the vectors returned with atom numbers

Description

Usage

Arguments