plotGAPS

The amplitude matrix ${\bf{A}}$ obtained from GAPS.

The pattern matrix ${\bf{P}}$ obtained from GAPS.

Name of an pdf file to which the results will be output.  (Optional; default="" will output plots to screen).

outputPDF

Plots the A and P matrices obtained from the GAPS matrix decomposition.

Coordinated Gene Activity in Pattern Sets (CoGAPS)
implements a Bayesian MCMC matrix factorization algorithm,
GAPS, and links it to gene set statistic methods to infer biological
process activity.  It can be used to perform sparse matrix factorization on
any data, and when this data represents biomolecules, to do gene set
analysis.

plotGAPS: Plotter for GAPS decomposition results

Description

Usage

Arguments

See Also