tf2ugFC

List of genes contained in gastrointestinal stromal tumor cell line measurements that are regulated by transcription factors in the TRANSFAC database.  Used for the gene set analysis in Ochs et al. (2009).


datasets

Coordinated Gene Activity in Pattern Sets (CoGAPS)
implements a Bayesian MCMC matrix factorization algorithm,
GAPS, and links it to gene set statistic methods to infer biological
process activity.  It can be used to perform sparse matrix factorization on
any data, and when this data represents biomolecules, to do gene set
analysis.

Elana J Fertig

CoGAPS

Coordinated Gene Activity in Pattern Sets

tf2ugFC function

Data.frame containing genes (rows) regulated by each transcription factor (columns).

Format

List of genes contained in gastrointestinal stromal tumor cell line measurements that are regulated by transcription factors in the TRANSFAC database.  Used for the gene set analysis in Ochs et al. (2009).

tf2ugFC: Gene sets defined by transcription factors defined from TRANSFAC.

Description

Usage

Arguments

Format

References