HumanTF

HumanTF_entrezgene


A list of 2020 Human Transcription Factors in EntrezGene or Official Gene Symbol (HUGO) from the FANTOM consortium (Ravasi et al, 2010).


datasets

This package provides methods to identify active
transcriptional programs. Methods and classes are provided to
import or infer large scale co-regulatory network from
transcriptomic data. The specificity of the encoded networks is
to model Transcription Factor cooperation. External regulation
evidences (TFBS, ChIP,...) can be integrated to assess the
inferred network and refine it if necessary. Transcriptional
activity of the regulators in the network can be estimated
using an measure of their influence in a given sample. Finally,
an interactive UI can be used to navigate through the network
of cooperative regulators and to visualize their activity in a
specific sample or subgroup sample. The proposed visualization
tool can be used to integrate gene expression, transcriptional
activity, copy number status, sample classification and a
transcriptional network including co-regulation information.

Remy Nicolle

CoRegNet

CoRegNet : reconstruction and integrated analysis of co-regulatory
networks

HumanTF function

Two different objects :
  <dl>
    <dt><code>HumanTF_entrezgene</code></dt><dd>A character vector of EntrezGene</dd> <dt><code>HumanTF</code></dt><dd>A character vector of Official (HUGO) gene symbols</dd> </dl> 

Format

A list of 2020 Human Transcription Factors in EntrezGene or Official Gene Symbol (HUGO) from the FANTOM consortium (Ravasi et al, 2010).

HumanTF: List of Human Transcription Factors.

Description

Usage

Arguments

Format

References

Examples