CodelistGenerator (version 3.3.1)

summariseCodeUse: Summarise code use in patient-level data

Description

Summarise code use in patient-level data

Usage

summariseCodeUse(
  x,
  cdm,
  countBy = c("record", "person"),
  byConcept = TRUE,
  byYear = FALSE,
  bySex = FALSE,
  ageGroup = NULL
)

Value

A tibble with results overall and, if specified, by strata

Arguments

x

List of concept IDs

cdm

cdm_reference via CDMConnector::cdm_from_con()

countBy

Either "record" for record-level counts or "person" for person-level counts

byConcept

TRUE or FALSE. If TRUE code use will be summarised by concept

byYear

TRUE or FALSE. If TRUE code use will be summarised by year.

bySex

TRUE or FALSE. If TRUE code use will be summarised by sex.

ageGroup

If not NULL, a list of ageGroup vectors of length two.

Examples

if (FALSE) {
con <- DBI::dbConnect(duckdb::duckdb(),
                      dbdir = CDMConnector::eunomia_dir())
cdm <- CDMConnector::cdm_from_con(con,
                                  cdm_schem = "main",
                                  write_schema = "main")
acetiminophen <- c(1125315,  1127433, 40229134,
40231925, 40162522, 19133768,  1127078)
poliovirus_vaccine <- c(40213160)
cs <- list(acetiminophen = acetiminophen,
          poliovirus_vaccine = poliovirus_vaccine)
results <- summariseCodeUse(cs,cdm = cdm)
results
CDMConnector::cdmDisconnect(cdm)
}